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1 Appendix I. Allele sizes of microsatellite loci employed in the study locus 66HDZ locus M

2 locus 66HDZ locus 66HDZ

3 195 locus 66HDZ locus 66HDZ

4 locus 66HDZ locus 66HDZ

5 locus 66HDZ locus 66HDZ

6 locus 66HDZ locus 66HDZ

7 locus 66HDZ locus 66HDZ

8 212 locus 66HDZ locus 66HDZ

9 211 locus M locus M

10 locus M locus M

11 II. Graphical display of results from Bayesian clustering for dataset including animals from the Prague ZOO K6 K5 K4 K3 K2 59

12 III. Table of all sampled localities with GPS coordinates Country Locality Coordinates N Cyprus Ahanas, Androlika Cyprus Pissouri Cyprus Pomos dam Cyprus Akamas Pen., Smigies Trail Cyprus Episkopi, Katarina Travel garden Cyprus Happy Valley, with wall Cyprus Ergates - at fruiting date palm Cyprus Gerolakkos-Alaykoy, gallery in quarry Cyprus Mammari Cyprus Afendrika Cyprus Agirdag, mettiy Cyprus Yedikonuk Cyprus Smigies Turkey Antalya, gardens at suburb Turkey Yakacik Turkey Adana, old flour factory Turkey Sayköy Turkey Cevlik, above village Turkey Demrek, Dipsiz Turkey Harbiye, in travertine in city Syria Talsh'hab (Der'a) Syria Ya'ar Oden (Golan Heights) Lebanon Adloun Lebanon Bergual Lebanon Jeita Lebanon Jazzine, Pont Al Khalass Lebanon Mtal al Azraq Lebanon Wataweet Lebanon Beirut Lebanon Nahr el Litani Lebanon Nahr es Safa Lebanon Amchite / Saleh Lebanon Afqa Lebanon Antelias, Kanaan Israel Mt. Carmel (Lower Galilee) Jordan Kufranja, Iraq Al Wahaj Jordan Tabaqat Fahl Jordan Iraq al Amir Jordan Wadi Dana, Egypt Sinai, Ein El Furtaga Egypt Sinai, Ein Khudra Egypt Sinai, Wadi El Feiran Egypt Kahira, botanical garden Egypt Asuan, gardens

13 Egypt El Aquaba Egypt Baviti-Baharia Oasis Egypt Mut, Dachla Egypt Dachla Al Qasr Egypt Kharga Yemen 5 km W of Hammam Ali Yemen Jebel Bura, W of Riqab Yemen Ma'arib Yemen Wadi Al Lahm, W of Al Mahwit Yemen Wadi Dhahr, N of Sana'a Yemen Wadi Maytam, 12 km SE Ibb Yemen Al Khuraybah, Wadi Daw'an Yemen Sah, Wadi Haramawt Yemen Hawf Oman Ain Jarziz Oman Ain Tabruq Oman Taiq Oman Al Nakhar Oman Dibab Iran Espakeh (Baluchestan) Sudan Ferka, old house Ethiopia Tepi 5 km S Uganda N/A 12 N/A N/A 1 Malawi Mulanje Chitakali (Chipoka village) Malawi Mpalanganga estate, Zomba N/A N/A 1 Ethiopia Masha ca. 15 km N N/A N/A 2 Malawi Zomba Plateau N/A N/A 2 unknown Prague ZOO N/A N/A Not Available 61

14 IV. Results of Pairwise Population PhiPT Analysis PhiPT Values below diagonal (light blue); probability values based on 999 permutations are shown above diagonal (white) Ahanas, Androlika Pissouri Ergates - at fruiting date palm Gerolakkos - Alaykoy, gallery in quarry Mammari Afendrika Yedikonuk Smigies Antalya, gardens at suburb Adana, old flour factory Sayköy Cevlik, above village Demrek, Dipsiz Harbiye, in travertine in city Ahanas Androlika Pissouri Ergates - at fruiting date palm Gerolakkos Alaykoy. gallery in quarry Mammari Afendrika Yedikonuk Smigies Antalya gardens at suburb Adana. old flour factory Sayköy Cevlik above village Demrek Dipsiz Harbiye in travertine in city Adloun Bergual Jeita Adloun Bergual Jeita 62

15 Jazzine Pont Al Khalass Mtal al Azraq Wataweet Amchite Cave / Saleh Antelias Kanaan Kufranja Iraq Al Wahaj Cave Iraq al Amir Wadi Dana Kahira botanical garden Asuan gardens El Aquaba Dachla El Qasr Mut. Dachla Kharga Ain Tabruq Taiq Al Nakhar Prague ZOO Ahanas. Androlika Pissouri Ergates - at fruiting date palm Gerolakkos - Alaykoy. gallery in quarry Mammari Afendrika Yedikonuk Smigies Antalya. gardens at suburb Adana. old flour factory Sayköy Cevlik. above village Demrek. Dipsiz Harbiye. in travertine in city Adloun Bergual Jeita 63

16 Jazzine. Pont Al Khalass Mtal al Azraq Wataweet Amchite / Saleh Antelias. Kanaan Kufranja. Iraq Al Wahaj Iraq al Amir Wadi Dana Ahanas Androlika Pissouri Ergates - at fruiting date palm Gerolakkos Alaykoy. gallery in quarry Mammari Afendrika Yedikonuk Smigies Antalya gardens at suburb Adana. old flour factory Sayköy Cevlik above village Demrek Dipsiz Harbiye in travertine in city Adloun Bergual Jeita Jazzine. Pont Al Khalass Mtal al Azraq Kahira. botanical garden Asuan. gardens El Aquaba Dachla El Qasr Mut. Dachla Kharga Ain Tabruq Taiq Al Nakhar Prague ZOO Wataweet Amchite / Saleh

17 Antelias Kanaan Kufranja Iraq Al Wahaj Iraq al Amir Wadi Dana Kahira botanical garden Asuan gardens El Aquaba Dachla El Qasr Mut. Dachla Kharga Ain Tabruq Taiq Al Nakhar Prague ZOO Jazzine, Pont Al Khalass Mtal al Azraq Wataweet Amchite / Saleh Antelias, Kanaan Kufranja, Iraq Al Wahaj Iraq al Amir Wadi Dana Kahira, botanical garden Asuan, gardens El Aquaba Dachla El Qasr Mut, Dachla Kharga Ain Tabruq Taiq Al Nakhar Prague ZOO 65

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